---
title: "Power Analysis"
output: rmarkdown::html_vignette
vignette: >
  %\VignetteIndexEntry{Power Analysis}
  %\VignetteEngine{knitr::rmarkdown}
  \usepackage[utf8]{inputenc}
  \usepackage{xcolor}
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bibliography: "`r here::here('vignettes', 'library.bib')`"
---

```{r setup, include=FALSE, message=FALSE, warning=FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  warning = FALSE,
  message = FALSE,
  fig.retina = 3,
  comment = "#>"
)

set.seed(123)
```

Power analysis determines the sample size needed to reliably detect effects of a given magnitude in your choice experiment. By simulating choice data and estimating models at different sample sizes, you can identify the minimum number of respondents needed to achieve your desired level of statistical precision. This article shows how to conduct power analyses using `cbc_power()`.

Before starting, let's define some basic profiles, a basic random design, some priors, and some simulated choices to work with:

```{r}
library(cbcTools)

# Create example data for power analysis
profiles <- cbc_profiles(
  price = c(1, 1.5, 2, 2.5, 3),
  type = c('Fuji', 'Gala', 'Honeycrisp'),
  freshness = c('Poor', 'Average', 'Excellent')
)

# Create design and simulate choices
design <- cbc_design(
  profiles = profiles,
  n_alts = 2,
  n_q = 6,
  n_resp = 600, # Large sample for power analysis
  method = "random"
)

priors <- cbc_priors(
  profiles = profiles,
  price = -0.25,
  type = c(0.5, 1.0),
  freshness = c(0.6, 1.2)
)

choices <- cbc_choices(design, priors = priors)
head(choices)
```

# Understanding Power Analysis

## What is Statistical Power?

Statistical power is the probability of correctly detecting an effect when it truly exists. In choice experiments, power depends on:

- **Effect size**: Larger effects are easier to detect
- **Sample size**: More respondents provide more precision
- **Design efficiency**: Better designs extract more information per respondent
- **Model complexity**: More parameters require larger samples

## Why Conduct Power Analysis?

- **Sample size planning**: Determine minimum respondents needed
- **Budget planning**: Estimate data collection costs
- **Design comparison**: Choose between alternative experimental designs
- **Feasibility assessment**: Check if research questions are answerable with available resources

## Power vs. Precision

Power analysis in `cbc_power()` focuses on **precision** (standard errors) rather than traditional hypothesis testing power, because:

- Provides more actionable information for sample size planning
- Relevant for both significant and non-significant results
- Easier to interpret across different effect sizes
- More directly tied to practical research needs

# Basic Power Analysis

Start with a basic power analysis using auto-detection of parameters:

```{r}
# Basic power analysis with auto-detected parameters
power_basic <- cbc_power(
  data = choices,
  outcome = "choice",
  obsID = "obsID",
  n_q = 6,
  n_breaks = 10
)

# View the power analysis object
power_basic

# Access the detailed results data frame
head(power_basic$power_summary)
tail(power_basic$power_summary)
```

## Parameter Specification Options

### Auto-Detection (Recommended)

By default, `cbc_power()` automatically detects all attribute parameters from your choice data:

```{r}
# Auto-detection works with dummy-coded data
power_auto <- cbc_power(
  data = choices,
  outcome = "choice",
  obsID = "obsID",
  n_q = 6,
  n_breaks = 8
)

# Shows all parameters: price, typeGala, typeHoneycrisp, freshnessAverage, freshnessExcellent

power_auto
```

### Specify Dummy-Coded Parameters

You can explicitly specify which dummy-coded parameters to include:

```{r}
# First create dummy-coded version of the choices data
choices_dummy <- cbc_encode(choices, 'dummy')

# Focus on specific dummy-coded parameters
power_specific <- cbc_power(
  data = choices_dummy,
  pars = c(
    # Specific dummy variables
    "price",
    "typeHoneycrisp",
    "freshnessExcellent"
  ),
  outcome = "choice",
  obsID = "obsID",
  n_q = 6,
  n_breaks = 8
)

power_specific
```

### When to Use Each Approach

- **Auto-detection**: Best for comprehensive power analysis of all effects
- **Dummy-coded specification**: When you want to focus on specific levels of categorical variables

## Understanding Power Results

The power analysis returns a list object with several components:

- **`power_summary`**: Data frame with sample sizes, coefficients, estimates, standard errors, t-statistics, and power
- **`sample_sizes`**: Vector of sample sizes tested  
- **`n_breaks`**: Number of breaks used
- **`alpha`**: Significance level used
- **`choice_info`**: Information about the underlying choice simulation

The `power_summary` data frame contains:

- **sample_size**: Number of respondents in each analysis
- **parameter**: Parameter name being estimated
- **estimate**: Coefficient estimate
- **std_error**: Standard error of the estimate
- **t_statistic**: t-statistic (estimate/std_error)
- **power**: Statistical power (probability of detecting effect)

## Visualizing Power Curves

Plot power curves to visualize the relationship between sample size and precision:

```{r, fig.alt = "Power analysis chart showing statistical power vs sample size for 5 parameters. A red dashed line marks 90% power threshold. Most parameters achieve adequate power by 100 respondents, though freshnessAverage and typeGala require larger sample sizes than price and other freshness/type parameters."}

# Plot power curves
plot(
  power_basic,
  type = "power",
  power_threshold = 0.9
)
```

```{r, fig.alt = "Standard error chart showing decreasing standard errors as sample size increases from 100 to 600 respondents for 5 parameters. All parameters show the expected decline in standard error with larger samples, with price having consistently lower standard errors than the freshness and type parameters."}

# Plot standard error curves
plot(
  power_basic,
  type = "se"
)
```

## Interpreting Results

```{r}
# Sample size requirements for 90% power
summary(
  power_basic,
  power_threshold = 0.9
)
```

From these results, you can determine:

- Which parameters need the largest samples
- Whether your planned sample size is adequate
- How much precision improves with additional respondents

## Mixed Logit Models

Conduct power analysis for random parameter models:

```{r}
# Create choices with random parameters
priors_random <- cbc_priors(
  profiles = profiles,
  price = rand_spec(
    dist = "n",
    mean = -0.25,
    sd = 0.1
  ),
  type = rand_spec(
    dist = "n",
    mean = c(0.5, 1.0),
    sd = c(0.5, 0.5)
  ),
  freshness = c(0.6, 1.2)
)

choices_mixed <- cbc_choices(
  design,
  priors = priors_random
)

# Power analysis for mixed logit model
power_mixed <- cbc_power(
  data = choices_mixed,
  pars = c("price", "type", "freshness"),
  randPars = c(price = "n", type = "n"), # Specify random parameters
  outcome = "choice",
  obsID = "obsID",
  panelID = "respID", # Required for panel data
  n_q = 6,
  n_breaks = 10
)

# Mixed logit models generally require larger samples
power_mixed
```

# Comparing Design Performance

## Design Method Comparison

Compare power across different design methods:

```{r}
# Create designs with different methods
design_random <- cbc_design(
  profiles,
  n_alts = 2,
  n_q = 6,
  n_resp = 200,
  method = "random"
)
design_shortcut <- cbc_design(
  profiles,
  n_alts = 2,
  n_q = 6,
  n_resp = 200,
  method = "shortcut"
)
design_optimal <- cbc_design(
  profiles,
  n_alts = 2,
  n_q = 6,
  n_resp = 200,
  priors = priors,
  method = "stochastic"
)

# Simulate choices with same priors for fair comparison
choices_random <- cbc_choices(
  design_random,
  priors = priors
)
choices_shortcut <- cbc_choices(
  design_shortcut,
  priors = priors
)
choices_optimal <- cbc_choices(
  design_optimal,
  priors = priors
)

# Conduct power analysis for each
power_random <- cbc_power(
  choices_random,
  n_breaks = 8
)
power_shortcut <- cbc_power(
  choices_shortcut,
  n_breaks = 8
)
power_optimal <- cbc_power(
  choices_optimal,
  n_breaks = 8
)
```

```{r, fig.alt = "Power comparison across three experimental designs (Optimal, Random, Shortcut) shown in separate panels for 5 parameters. Each panel shows power curves with an 80% power threshold line. The Shortcut design generally performs best, followed by Optimal, then Random designs. Some parameters like freshnessExcellent and typeHoneycrisp achieve high power quickly across all designs, while others like typeGala show more variation between design methods."}

# Compare power curves
plot_compare_power(
  Random = power_random,
  Shortcut = power_shortcut,
  Optimal = power_optimal,
  type = "power"
)
```

# Advanced Analysis

## Returning Full Models

Access complete model objects for detailed analysis:

```{r}
# Return full models for additional analysis
power_with_models <- cbc_power(
  data = choices,
  outcome = "choice",
  obsID = "obsID",
  n_q = 6,
  n_breaks = 5,
  return_models = TRUE
)

# Examine largest model
largest_model <- power_with_models$models[[length(power_with_models$models)]]
summary(largest_model)
```

# Best Practices

## Power Analysis Workflow

1. **Start with literature**: Base effect size assumptions on previous studies
2. **Use realistic priors**: Conservative estimates are often better than optimistic ones
3. **Test multiple scenarios**: Conservative, moderate, and optimistic effect sizes
4. **Compare designs**: Test different design methods and features
5. **Plan for attrition**: Add 10-20% to account for incomplete responses
6. **Document assumptions**: Record all assumptions for future reference