---
title: "visxhclust Shiny app tutorial"
output: rmarkdown::html_vignette
vignette: >
  %\VignetteIndexEntry{visxhclust Shiny app tutorial}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
---

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
```

This is a simple visual tutorial on the basic loop of the visxhclust Shiny app -- note that almost every tab in the application has a corresponding help icon with more information and tips. To open the Shiny app you need to run:

```{r run, eval=FALSE}
library(visxhclust)
run_app()
```

## Steps for simple iteration

### Step 1: Loading data and setting parameters

![Step 1](load_data.gif)

### Step 2: View clustering results

![Step 2](view_results.gif)

### Step 3: Evaluate

![Step 3](evaluate.gif)

### Step 4: Change parameters again

![Step 4](iterate.gif)

### Step 5: Review results

![Step 5](review_results.gif)